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Species belonging to selected taxon:
Panicum virgatum
,
Saccharum hybrid cultivar CoS 767
,
Saccharum hybrid cultivar SP70-1143
,
Saccharum officinarum
,
Sorghum propinquum
,
Cenchrus ciliaris
,
Zea mays
,
Sorghum bicolor
ABOUT THIS RECORD
ID:
MNEST042523
species:
Sorghum bicolor
miRNA family:
MIR167
source:
miRBase, original name:
sbi-MIR167e
(
MI0001554
)
Taxonomy by NCBI:
Sorghum bicolor
Sorghum
Andropogoneae
Panicoideae
PACCAD clade
Poaceae
Poales
commelinids
Liliopsida
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TGAAGCTGCCAGCATGATCTG
miRNA*
GGTCATGCTGTAGTTTCATC
mismatches:
0
bulges:
1
View larger
pre-miRNA
AGTGGTGCACCACAAGTTGG
TGAAGCTGCCAGCATGATCTG
ATGTCTTTATATATATTAATTACCTCTGATTTCTCCCTGACTGTTATGGATCGATGAAT
TCAGATATGAGGGGAAGGAAGAAAGAGGAATAATGAGCATCA
GGTCATGCTGTAGTTTCATC
CGCTGGTGGGAGCACAT
dot-bracket secondary structure
....((((.((((.(((.((
(((((((((.(((((((((((
(((.(((.......((((.((.(((((..(((((((((...((((.(((((......))
)))))))...)))).)))))...)))))))))))))))))))
))))))))))))))))))))
.))).))))..))))..
SIMILARITIES
miRBase
sof-MIR167b
:
4e-42
PMRD
sbi-miR167e
:
7e-99
microPC
miR167
:
2e-25
UniProt
no hits
RFAM
MIR167_1: 3e-89
Identical with:
sbi-miR167e
from PMRD (
MNEST054431
)
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
additional data
download this record
references
[
1
] Dezulian T, Palatnik JF, Huson DH, Weigel D,
http://genomebiology.com/2005/6/11/p13 (2005).
,
"Conservation and divergence of microRNA families in plants"