miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Agrostis stolonifera, Oryza sativa, Avena barbata, Avena sativa, Curcuma longa, Cynodon dactylon, Elaeis guineensis, Eragrostis curvula, Festuca arundinacea, Festuca pratensis, Hordeum vulgare, Hordeum vulgare subsp. spontaneum, Leymus cinereus x Leymus triticoides, Lolium perenne, Musa ABB Group, Panicum virgatum, Pseudoroegneria spicata, Saccharum hybrid cultivar CoS 767, Saccharum hybrid cultivar SP70-1143, Saccharum officinarum, Sorghum propinquum, Triticum monococcum, Triticum turgidum subsp. durum, Zingiber officinale, Cenchrus ciliaris, Brachypodium distachyon, Zea mays, Triticum aestivum, Sorghum bicolor



ABOUT THIS RECORD

ID: MNEST042523
species: Sorghum bicolor
miRNA family: MIR167
source: miRBase, original name: sbi-MIR167e (MI0001554)

Taxonomy by NCBI:
Sorghum bicolor Sorghum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGAAGCTGCCAGCATGATCTG

miRNA*
GGTCATGCTGTAGTTTCATC

mismatches: 0
bulges: 1

View larger
pre-miRNA
AGTGGTGCACCACAAGTTGGTGAAGCTGCCAGCATGATCTGATGTCTTTATATATATTAATTACCTCTGATTTCTCCCTGACTGTTATGGATCGATGAAT
TCAGATATGAGGGGAAGGAAGAAAGAGGAATAATGAGCATCAGGTCATGCTGTAGTTTCATCCGCTGGTGGGAGCACAT


dot-bracket secondary structure
....((((.((((.(((.(((((((((((.((((((((((((((.(((.......((((.((.(((((..(((((((((...((((.(((((......))
)))))))...)))).)))))...))))))))))))))))))))))))))))))))))))))).))).))))..))))..



SIMILARITIES
miRBase sof-MIR167b: 4e-42

PMRD sbi-miR167e: 7e-99

microPC miR167: 2e-25
UniProt no hits

RFAM MIR167_1: 3e-89

Identical with: sbi-miR167e from PMRD (MNEST054431)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record

references

[1] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"




Liczniki na strone;