miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Actinidia chinensis, Actinidia deliciosa, Actinidia eriantha, Antirrhinum majus, Barnadesia spinosa, Cichorium intybus, Coffea canephora, Fraxinus excelsior, Gerbera hybrid cultivar, Guizotia abyssinica, Helianthus argophyllus, Helianthus ciliaris, Helianthus exilis, Helianthus paradoxus, Helianthus petiolaris, Helianthus tuberosus, Ipomoea batatas, Lactuca perennis, Lactuca saligna, Lactuca sativa, Lactuca serriola, Lactuca virosa, Mimulus guttatus, Mimulus guttatus var. nasutus, Mimulus lewisii, Nicotiana benthamiana, Nicotiana langsdorffii x Nicotiana sanderae, Nicotiana tabacum, Ocimum basilicum, Panax ginseng, Parthenium argentatum, Petunia axillaris subsp. axillaris, Salvia miltiorrhiza, Solanum habrochaites, Solanum lycopersicum, Solanum melongena, Solanum pennellii, Solanum torvum, Striga hermonthica, Taraxacum kok-saghyz, Taraxacum officinale, Triphysaria pusilla, Triphysaria versicolor, Zinnia violacea, Capsicum annuum, Carthamus tinctorius, Catharanthus roseus, Centaurea maculosa, Centaurea solstitialis, Cichorium endivia, Artemisia annua, Helianthus annuus, Solanum tuberosum, Ipomoea nil



ABOUT THIS RECORD

ID: MNEST048684
species: Lactuca sativa
miRNA family: MIR157
source: PMRD, original name: lsa-miR157

Taxonomy by NCBI:
Lactuca sativa Lactuca Lactucinae Cichorieae Cichorioideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TTGACAGAAGAGAGAGAGCAC

miRNA*
 GGAGGAGACAGTTCCATAGCGAGTGGATAGCAGAGATGGCTTTCTTCTACGTTCATTGTGCCCA

mismatches: 6
bulges: 1
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pre-miRNA
 TTGACAGAAGAGAGAGAGCACAGTTGGAGTCCTCACGGACTCCATTAAAACACCCTCCTGGTGGAACATAAGGAGGTGGATTATCCAGGTTGCTTTGCCA
TGGAAGCGGTGGGAACTTTTCTCCGGCAATTGGGAGGTCGATGGCGGCTCGAGGCGGTGGTGCCGCCCTTGTTCCTGGCCACTGAATCCTTCCTCTTGAG
CATGACGAAAAGTCCATTAGAAAGCCTCCAGAATTCCCATTGTTTTCAAAGATTGAGGAGGAGACAGTTCCATAGCGAGTGGATAGCAGAGATGGCTTTC
TTCTACGTTCATTGTGCCCAGCCAATCGTCTCCTGCAGCTTCTTTTTCCCTGGTCAA

dot-bracket secondary structure
.((((....((((((((((.((((((((((((....)))))))..(((..((((.((((.(((...))).))))))))..)))....(((......))).
(((((((((((((((...((((..(((....(((((((((.((((((..((((((((.....))).)))))..))..)))).)))..)))))).......
...(((.....))).........)))...)))))))))))))))))))..))))).(.(((((((.(((((((.....)))))..)).....(((((...
...((((.....))))...)))))...))))))).).)).))))))))....)))).


SIMILARITIES
miRBase far-MIR156b: 0.00000008

PMRD lsa-miR156: 0

microPC miR157: 0.00007		UniProt sp|A3C057|SPL17_ORYSJ: 0.00000000000006

RFAM no hits

Identical with: lsa-miR156 from PMRD (MNEST048683)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
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