miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Lactuca perennis, Lactuca saligna, Lactuca sativa, Lactuca serriola, Lactuca virosa



ABOUT THIS RECORD

ID: MNEST048684
species: Lactuca sativa
miRNA family: MIR157
source: PMRD, original name: lsa-miR157

Taxonomy by NCBI:
Lactuca sativa Lactuca Lactucinae Cichorieae Cichorioideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TTGACAGAAGAGAGAGAGCAC

miRNA*
GGAGGAGACAGTTCCATAGCGAGTGGATAGCAGAGATGGCTTTCTTCTACGTTCATTGTGCCCA

mismatches: 6
bulges: 1

View larger
pre-miRNA
TTGACAGAAGAGAGAGAGCACAGTTGGAGTCCTCACGGACTCCATTAAAACACCCTCCTGGTGGAACATAAGGAGGTGGATTATCCAGGTTGCTTTGCCA
TGGAAGCGGTGGGAACTTTTCTCCGGCAATTGGGAGGTCGATGGCGGCTCGAGGCGGTGGTGCCGCCCTTGTTCCTGGCCACTGAATCCTTCCTCTTGAG
CATGACGAAAAGTCCATTAGAAAGCCTCCAGAATTCCCATTGTTTTCAAAGATTGAGGAGGAGACAGTTCCATAGCGAGTGGATAGCAGAGATGGCTTTC
TTCTACGTTCATTGTGCCCA
GCCAATCGTCTCCTGCAGCTTCTTTTTCCCTGGTCAA


dot-bracket secondary structure
.((((....((((((((((.((((((((((((....)))))))..(((..((((.((((.(((...))).))))))))..)))....(((......))).
(((((((((((((((...((((..(((....(((((((((.((((((..((((((((.....))).)))))..))..)))).)))..)))))).......
...(((.....))).........)))...)))))))))))))))))))..))))).(.(((((((.(((((((.....)))))..)).....(((((...
...((((.....))))...)
))))...))))))).).)).))))))))....)))).



SIMILARITIES
miRBase far-MIR156b: 0.00000008

PMRD lsa-miR156: 0

microPC miR157: 0.00007
UniProt sp|A3C057|SPL17_ORYSJ: 0.00000000000006

RFAM no hits

Identical with: lsa-miR156 from PMRD (MNEST048683)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
download this record





Liczniki na strone;