miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Barnadesia spinosa, Cichorium intybus, Gerbera hybrid cultivar, Guizotia abyssinica, Helianthus argophyllus, Helianthus ciliaris, Helianthus exilis, Helianthus paradoxus, Helianthus petiolaris, Helianthus tuberosus, Lactuca perennis, Lactuca saligna, Lactuca sativa, Lactuca serriola, Lactuca virosa, Parthenium argentatum, Taraxacum kok-saghyz, Taraxacum officinale, Zinnia violacea, Carthamus tinctorius, Centaurea maculosa, Centaurea solstitialis, Cichorium endivia, Artemisia annua, Helianthus annuus



ABOUT THIS RECORD

ID: MNEST048684
species: Lactuca sativa
miRNA family: MIR157
source: PMRD, original name: lsa-miR157

Taxonomy by NCBI:
Lactuca sativa Lactuca Lactucinae Cichorieae Cichorioideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TTGACAGAAGAGAGAGAGCAC

miRNA*
GGAGGAGACAGTTCCATAGCGAGTGGATAGCAGAGATGGCTTTCTTCTACGTTCATTGTGCCCA

mismatches: 6
bulges: 1

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pre-miRNA
TTGACAGAAGAGAGAGAGCACAGTTGGAGTCCTCACGGACTCCATTAAAACACCCTCCTGGTGGAACATAAGGAGGTGGATTATCCAGGTTGCTTTGCCA
TGGAAGCGGTGGGAACTTTTCTCCGGCAATTGGGAGGTCGATGGCGGCTCGAGGCGGTGGTGCCGCCCTTGTTCCTGGCCACTGAATCCTTCCTCTTGAG
CATGACGAAAAGTCCATTAGAAAGCCTCCAGAATTCCCATTGTTTTCAAAGATTGAGGAGGAGACAGTTCCATAGCGAGTGGATAGCAGAGATGGCTTTC
TTCTACGTTCATTGTGCCCA
GCCAATCGTCTCCTGCAGCTTCTTTTTCCCTGGTCAA


dot-bracket secondary structure
.((((....((((((((((.((((((((((((....)))))))..(((..((((.((((.(((...))).))))))))..)))....(((......))).
(((((((((((((((...((((..(((....(((((((((.((((((..((((((((.....))).)))))..))..)))).)))..)))))).......
...(((.....))).........)))...)))))))))))))))))))..))))).(.(((((((.(((((((.....)))))..)).....(((((...
...((((.....))))...)
))))...))))))).).)).))))))))....)))).



SIMILARITIES
miRBase far-MIR156b: 0.00000008

PMRD lsa-miR156: 0

microPC miR157: 0.00007
UniProt sp|A3C057|SPL17_ORYSJ: 0.00000000000006

RFAM no hits

Identical with: lsa-miR156 from PMRD (MNEST048683)

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
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