ABOUT THIS RECORDspecies: Arabidopsis thaliana
miRNA family: MIRf164
source: miRNEST
Taxonomy by NCBI:
Arabidopsis thaliana Arabidopsis Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GATGATCCGTNACGATGTGGT miRNA* CGCATCTCGCGGATCGTTTG mismatches: 2 bulges: 1 |
pre-miRNA
AAACGCAAAGGGCTAANAGTGGCTGTGACCGGTGGGGCTGGATTCGTTGGATCGCATCTCGCGGATCGTTTGATGGCTAGAGGAGATACTGTGATTGTTG
TTGATAATTTCTTCACTGGAAGGAAAGAGAACGTTATGCACCATTTCATNAACCCTAACTTTGAGATGATCCGTNACGATGTGGTTGAGCCGATTCTTCT
TGAGGTTGATCAGATCTACCATTTGGGTTGCCCT
dot-bracket secondary structure
........(((((.((..(((((((.((((..(((((..(((((.(((.(((((((((..(((((((((((...((.(((..(((((...(((..((.((
((.....(((((((....)))))))....)))).))..))).))))).......))).))...)))))))))))...))))))))).))).))))).)))
)).))))...)))..))))..))......)))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
Source sequences
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AAACGCAAAGGGCTAANAGTGGCTGTGACCGGTGGGGCTGGATTCGTTGGATCGCATCTCGCGGATCGTTTGATGGCTAGAGGAGATACTGTGATTGTTG
TTGATAATTTCTTCACTGGAAGGAAAGAGAACGTTATGCACCATTTCATNAACCCTAACTTTGAGATGATCCGTNACGATGTGGTTGAGCCGATTCTTCT
TGAGGTTGATCAGATCTACCATTTGGGTTGCCCT
dot-bracket secondary structure
........(((((.((..(((((((.((((..(((((..(((((.(((.(((((((((..(((((((((((...((.(((..(((((...(((..((.((
((.....(((((((....)))))))....)))).))..))).))))).......))).))...)))))))))))...))))))))).))).))))).)))
)).))))...)))..))))..))......)))))
SIMILARITIES| miRBase no hits PMRD ath-miRf10188-akr: 4e-70 microPC no hits | UniProt sp|Q6DF08|UXS1_XENTR: 6e-16 RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
Source sequences
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