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Species belonging to selected taxon:
Arabidopsis thaliana
ABOUT THIS RECORD
ID:
MNEST055434
species:
Arabidopsis thaliana
miRNA family:
MIRf164
source:
miRNEST
Taxonomy by NCBI:
Arabidopsis thaliana
Arabidopsis
Brassicaceae
Brassicales
malvids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
GATGATCCGTNACGATGTGGT
miRNA*
CGCATCTCGCGGATCGTTTG
mismatches:
2
bulges:
1
View larger
pre-miRNA
AAACGCAAAGGGCTAANAGTGGCTGTGACCGGTGGGGCTGGATTCGTTGGAT
CGCATCTCGCGGATCGTTTG
ATGGCTAGAGGAGATACTGTGATTGTTG
TTGATAATTTCTTCACTGGAAGGAAAGAGAACGTTATGCACCATTTCATNAACCCTAACTTTGA
GATGATCCGTNACGATGTGGT
TGAGCCGATTCTTCT
TGAGGTTGATCAGATCTACCATTTGGGTTGCCCT
dot-bracket secondary structure
........(((((.((..(((((((.((((..(((((..(((((.(((.(((
((((((..(((((((((((.
..((.(((..(((((...(((..((.((
((.....(((((((....)))))))....)))).))..))).))))).......))).))...)
))))))))))...))))))))
).))).))))).)))
)).))))...)))..))))..))......)))))
SIMILARITIES
miRBase
no hits
PMRD
ath-miRf10188-akr
:
4e-70
microPC
no hits
UniProt
sp|Q6DF08|UXS1_XENTR: 6e-16
RFAM
no hits
most similar mature miRNAs
MORE
miRNEST target predictions: none
non-miRNEST targets: none
Source sequences
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