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Species belonging to selected taxon:

Brassica napus, Brassica oleracea var. alboglabra, Brassica rapa, Limnanthes alba, Raphanus raphanistrum, Raphanus raphanistrum subsp. landra, Raphanus raphanistrum subsp. maritimus, Raphanus sativus, Raphanus sativus var. oleiformis, Thellungiella halophila, Tropaeolum majus, Carica papaya, Arabidopsis thaliana, Brassica oleracea



ABOUT THIS RECORD

ID: MNEST055434
species: Arabidopsis thaliana
miRNA family: MIRf164
source: miRNEST

Taxonomy by NCBI:
Arabidopsis thaliana Arabidopsis Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 GATGATCCGTNACGATGTGGT

miRNA*
 CGCATCTCGCGGATCGTTTG

mismatches: 2
bulges: 1
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pre-miRNA
 AAACGCAAAGGGCTAANAGTGGCTGTGACCGGTGGGGCTGGATTCGTTGGATCGCATCTCGCGGATCGTTTGATGGCTAGAGGAGATACTGTGATTGTTG
TTGATAATTTCTTCACTGGAAGGAAAGAGAACGTTATGCACCATTTCATNAACCCTAACTTTGAGATGATCCGTNACGATGTGGTTGAGCCGATTCTTCT
TGAGGTTGATCAGATCTACCATTTGGGTTGCCCT

dot-bracket secondary structure
........(((((.((..(((((((.((((..(((((..(((((.(((.(((((((((..(((((((((((...((.(((..(((((...(((..((.((
((.....(((((((....)))))))....)))).))..))).))))).......))).))...)))))))))))...))))))))).))).))))).)))
)).))))...)))..))))..))......)))))


SIMILARITIES
miRBase no hits

PMRD ath-miRf10188-akr: 4e-70

microPC no hits		UniProt sp|Q6DF08|UXS1_XENTR: 6e-16

RFAM no hits		most similar mature miRNAs

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miRNEST target predictions: none
non-miRNEST targets: none
Source sequences
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