miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Arabidopsis thaliana



ABOUT THIS RECORD

ID: MNEST055434
species: Arabidopsis thaliana
miRNA family: MIRf164
source: miRNEST

Taxonomy by NCBI:
Arabidopsis thaliana Arabidopsis Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
GATGATCCGTNACGATGTGGT

miRNA*
CGCATCTCGCGGATCGTTTG

mismatches: 2
bulges: 1

View larger
pre-miRNA
AAACGCAAAGGGCTAANAGTGGCTGTGACCGGTGGGGCTGGATTCGTTGGATCGCATCTCGCGGATCGTTTGATGGCTAGAGGAGATACTGTGATTGTTG
TTGATAATTTCTTCACTGGAAGGAAAGAGAACGTTATGCACCATTTCATNAACCCTAACTTTGAGATGATCCGTNACGATGTGGTTGAGCCGATTCTTCT
TGAGGTTGATCAGATCTACCATTTGGGTTGCCCT


dot-bracket secondary structure
........(((((.((..(((((((.((((..(((((..(((((.(((.(((((((((..(((((((((((...((.(((..(((((...(((..((.((
((.....(((((((....)))))))....)))).))..))).))))).......))).))...)))))))))))...))))))))).))).))))).)))
)).))))...)))..))))..))......)))))



SIMILARITIES
miRBase no hits

PMRD ath-miRf10188-akr: 4e-70

microPC no hits
UniProt sp|Q6DF08|UXS1_XENTR: 6e-16

RFAM no hits
most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
Source sequences
download this record





Liczniki na strone;