ABOUT THIS RECORDspecies: Salmo salar
miRNA family: miR-1692
source: miRNEST
Taxonomy by NCBI:
Salmo salar Salmo Salmoninae Salmonidae Salmonoidei Salmoniformes Protacanthopterygii Euteleostei Clupeocephala Elopocephala Teleostei Neopterygii Actinopteri Actinopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGTAGCTCAGTTGGTAGAGCA miRNA* TTACTGATTACTGAATTACACT mismatches: 5 bulges: 1 |
pre-miRNA
ATGAAGTTACATTACTGATGGTTACTGATTACTGAATTACACTTATCCAAACTAATGTGTTCAAAGCAATGAAGTCATTAGCCTTCCCTGTAGCTCAGTT
GGTAGAGCATGGTGTTTGCAACGCCAG
dot-bracket secondary structure
.........((((...)))).((((((...(((((.(((((..........((((((..((((......))))..)))))).......))))).))))))
)))))....(((((((...))))))).
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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ATGAAGTTACATTACTGATGGTTACTGATTACTGAATTACACTTATCCAAACTAATGTGTTCAAAGCAATGAAGTCATTAGCCTTCCCTGTAGCTCAGTT
GGTAGAGCATGGTGTTTGCAACGCCAG
dot-bracket secondary structure
.........((((...)))).((((((...(((((.(((((..........((((((..((((......))))..)))))).......))))).))))))
)))))....(((((((...))))))).
SIMILARITIES| miRBase no hits PMRD tae-miR2005: 0.0004 microPC no hits | UniProt no hits RFAM tRNA: 0.0000000001 | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
