miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Oryzias latipes, Salmo salar, Oncorhynchus mykiss, Gasterosteus aculeatus, Gadus morhua, Oreochromis niloticus, Fundulus heteroclitus, Sparus aurata, Dicentrarchus labrax, Dissostichus mawsoni, Osmerus mordax, Anoplopoma fimbria, Esox lucius, Takifugu rubripes, Sebastes caurinus, Perca flavescens, Paralabidochromis chilotes, Hippoglossus hippoglossus, Poecilia reticulata, Oncorhynchus tshawytscha, Paralichthys olivaceus, Psetta maxima, Lates calcarifer, Oncorhynchus nerka, Sebastes rastrelliger, Thymallus thymallus, Solea senegalensis, Coregonus clupeaformis, Thunnus thynnus, Cynoglossus semilaevis, Salvelinus fontinalis



ABOUT THIS RECORD

ID: MNEST006857
species: Salmo salar
miRNA family: miR-1692
source: miRNEST

Taxonomy by NCBI:
Salmo salar Salmo Salmoninae Salmonidae Salmonoidei Salmoniformes Protacanthopterygii Euteleostei Clupeocephala Elopocephala Teleostei Neopterygii Actinopteri Actinopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGTAGCTCAGTTGGTAGAGCA

miRNA*
TTACTGATTACTGAATTACACT

mismatches: 5
bulges: 1

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pre-miRNA
ATGAAGTTACATTACTGATGGTTACTGATTACTGAATTACACTTATCCAAACTAATGTGTTCAAAGCAATGAAGTCATTAGCCTTCCCTGTAGCTCAGTT
GGTAGAGCA
TGGTGTTTGCAACGCCAG


dot-bracket secondary structure
.........((((...)))).((((((...(((((.(((((..........((((((..((((......))))..)))))).......))))).))))))
)))))....
(((((((...))))))).



SIMILARITIES
miRBase no hits

PMRD tae-miR2005: 0.0004

microPC no hits
UniProt no hits

RFAM tRNA: 0.0000000001
most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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