miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Salmo salar, Oncorhynchus mykiss, Osmerus mordax, Oncorhynchus tshawytscha, Oncorhynchus nerka, Thymallus thymallus, Coregonus clupeaformis, Salvelinus fontinalis



ABOUT THIS RECORD

ID: MNEST006857
species: Salmo salar
miRNA family: miR-1692
source: miRNEST

Taxonomy by NCBI:
Salmo salar Salmo Salmoninae Salmonidae Salmonoidei Salmoniformes Protacanthopterygii Euteleostei Clupeocephala Elopocephala Teleostei Neopterygii Actinopteri Actinopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGTAGCTCAGTTGGTAGAGCA

miRNA*
TTACTGATTACTGAATTACACT

mismatches: 5
bulges: 1

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pre-miRNA
ATGAAGTTACATTACTGATGGTTACTGATTACTGAATTACACTTATCCAAACTAATGTGTTCAAAGCAATGAAGTCATTAGCCTTCCCTGTAGCTCAGTT
GGTAGAGCA
TGGTGTTTGCAACGCCAG


dot-bracket secondary structure
.........((((...)))).((((((...(((((.(((((..........((((((..((((......))))..)))))).......))))).))))))
)))))....
(((((((...))))))).



SIMILARITIES
miRBase no hits

PMRD tae-miR2005: 0.0004

microPC no hits
UniProt no hits

RFAM tRNA: 0.0000000001
most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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