miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Panicum virgatum, Saccharum hybrid cultivar CoS 767, Saccharum hybrid cultivar SP70-1143, Saccharum officinarum, Sorghum propinquum, Cenchrus ciliaris, Zea mays, Sorghum bicolor



ABOUT THIS RECORD

ID: MNEST008469
species: Sorghum bicolor
miRNA family: MIRf10
source: miRNEST

Taxonomy by NCBI:
Sorghum bicolor Sorghum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
CTCAAAAGATTCGTCTCGTGA

miRNA*
GCGAGACAAATATTTTGAGTC

mismatches: 2
bulges: 0

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pre-miRNA
ACTTATAATTTGCGAGACAAATATTTTGAGTCTATTTGTGACATACAAACGAACAATGTTTATTTTATAAAATTTTTTAGAACTAATTATACTTCTAAGC
ATGAACAACTACATGATGATACCGAGAAACCTAGGCCTTGTTTAGTTCCAAAATTTTTTGCAAAATCGACACTGTAGCACTTTTGTTTGTACTTGACAAA
TATTGTCCAACCATGGACTAACTAGGACTCAAAAGATTCGTCTCGTGATTTACAGC


dot-bracket secondary structure
.....(((.(((((((((.(((.((((((((((((((((....((((((((((((.((((.(((((.(((((..((((.(((((((.((..(((((...(
(((........)))).........))).....))....)).))))))).))))..))))).))))).)))).))).......)))))))))....)))))
).(((((((....))))).))...)))))))))).))).))))))))).)))....



SIMILARITIES
miRBase osa-MIR2124a: 0.00001

PMRD osa-miRf12089-akr: 0.00005

microPC no hits
UniProt no hits

RFAM no hits
most similar mature miRNAs

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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