ABOUT THIS RECORDspecies: Sorghum bicolor
miRNA family: MIR156
source: miRNEST
Taxonomy by NCBI:
Sorghum bicolor Sorghum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGACAGAAGAGAGTGAGCACA miRNA* TGCTCACTTCTCTTTCGGTCAGC mismatches: 2 bulges: 2 |
pre-miRNA
TTGAATAAGGCGCTCCTGGATGTGGAGAGGCTCTTGAGAGATTGACAGAAGAGAGTGAGCACACGGCGCGACGAACGGCATAATATGTATGTCGTCCTCGC
CGCGTGCTCACTTCTCTTTCGGTCAGCCTCTTCTGTTGATGGCTTATCTCCCATCTAGATCCGCT
dot-bracket secondary structure
).......((((...(((((((.(((((((((.(((((((.(((((.(((((((((((((((.(((((.(((((...((((...))))...)))))..)))
)).)))))))).)))))))..))))).))))).....)).))))..))))))))))))...))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TTGAATAAGGCGCTCCTGGATGTGGAGAGGCTCTTGAGAGATTGACAGAAGAGAGTGAGCACACGGCGCGACGAACGGCATAATATGTATGTCGTCCTCGC
CGCGTGCTCACTTCTCTTTCGGTCAGCCTCTTCTGTTGATGGCTTATCTCCCATCTAGATCCGCT
dot-bracket secondary structure
).......((((...(((((((.(((((((((.(((((((.(((((.(((((((((((((((.(((((.(((((...((((...))))...)))))..)))
)).)))))))).)))))))..))))).))))).....)).))))..))))))))))))...))))
SIMILARITIES| miRBase zma-MIR156d: 5.0E-41 PMRD sbi-miR157: 2.0E-43 microPC miR156: 3.0E-42 | UniProt no hits RFAM 6mir-156: 9.0E-40 | most similar mature miRNAs |
Identical with: miR156 from microPC (MNEST046791), sbi-miR157 from PMRD |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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