ABOUT THIS RECORDspecies: Caenorhabditis japonica
miRNA family: mir-1
source: miRNEST
Taxonomy by NCBI:
Caenorhabditis japonica Caenorhabditis Peloderinae Rhabditidae Rhabditoidea Rhabditida Chromadorea Nematoda Pseudocoelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGGAATGAAAAGAAATATGCT miRNA* TAAATGATTCTATTCCAGA mismatches: 4 bulges: 2 |
pre-miRNA
GAAAACCACATTGGAATGAAAAGAAATATGCTTTAAATAAAAAAAGGTAAATGATTCTATTCCAGAAAAAAAAG
dot-bracket secondary structure
..........((((((((.((....((.((((((.........)))))).))..)).)))))))).........
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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GAAAACCACATTGGAATGAAAAGAAATATGCTTTAAATAAAAAAAGGTAAATGATTCTATTCCAGAAAAAAAAG
dot-bracket secondary structure
..........((((((((.((....((.((((((.........)))))).))..)).)))))))).........
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
