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Species belonging to selected taxon:
Caenorhabditis elegans
,
Caenorhabditis japonica
,
Caenorhabditis brenneri
,
Caenorhabditis remanei
ABOUT THIS RECORD
ID:
MNEST009404
species:
Caenorhabditis japonica
miRNA family:
mir-1
source:
miRNEST
Taxonomy by NCBI:
Caenorhabditis japonica
Caenorhabditis
Peloderinae
Rhabditidae
Rhabditoidea
Rhabditida
Chromadorea
Nematoda
Pseudocoelomata
Bilateria
Eumetazoa
Metazoa
Fungi/Metazoa group
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TGGAATGAAAAGAAATATGCT
miRNA*
TAAATGATTCTATTCCAGA
mismatches:
4
bulges:
2
View larger
pre-miRNA
GAAAACCACAT
TGGAATGAAAAGAAATATGCT
TTAAATAAAAAAAGG
TAAATGATTCTATTCCAGA
AAAAAAAG
dot-bracket secondary structure
..........(
(((((((.((....((.((((
((.........))))
)).))..)).)))))))).
........
SIMILARITIES
miRBase
no hits
PMRD
no hits
microPC
no hits
UniProt
no hits
RFAM
no hits
most similar mature miRNAs
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction:
not a miRNA
Source sequences
download this record