ABOUT THIS RECORDspecies: Rana catesbeiana
miRNA family: miR-1933
source: miRNEST
Taxonomy by NCBI:
Rana catesbeiana Aquarana Aquarana/sylvatica group Novirana Rana Raninae Ranidae Ranoidea Neobatrachia Anura Batrachia Amphibia Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CCAGGACAATCAGGGTGACTC miRNA* TTTCCTTTAATTTCCTTACC mismatches: 5 bulges: 1 |
pre-miRNA
ACGTGTATGTCCCATTTGGGGAGATTTCCTTTAATTTCCTTACCAGTAGAAGTAATGGGGTTTCAAAGAGGAGCATAGAATTTTGAATGTCCCACCACCA
ATCACCATCATCAATTCTGGAAGTCCCAATACTACTGGTCACCAGGACAATCAGGGTGACTCTCACCAACGGGTGACACAGCGATAAAATC
dot-bracket secondary structure
.(((...((((((..((((.((((.((.((((.(((((((.((((((...((((.(((((((((..((((.............(((.((.........))
.)))..........)))).))))))))).))))))))))....)))).))).)))).)).)))).))))..)).))))..)))........
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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ACGTGTATGTCCCATTTGGGGAGATTTCCTTTAATTTCCTTACCAGTAGAAGTAATGGGGTTTCAAAGAGGAGCATAGAATTTTGAATGTCCCACCACCA
ATCACCATCATCAATTCTGGAAGTCCCAATACTACTGGTCACCAGGACAATCAGGGTGACTCTCACCAACGGGTGACACAGCGATAAAATC
dot-bracket secondary structure
.(((...((((((..((((.((((.((.((((.(((((((.((((((...((((.(((((((((..((((.............(((.((.........))
.)))..........)))).))))))))).))))))))))....)))).))).)))).)).)))).))))..)).))))..)))........
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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