ABOUT THIS RECORDspecies: Sebastes caurinus
miRNA family: mir-1827
source: miRNEST
Taxonomy by NCBI:
Sebastes caurinus Sebastes Sebastinae Sebastidae Scorpaenoidei Scorpaeniformes Percomorpha Euacanthopterygii Acanthopterygii Holacanthopterygii Euacanthomorpha Acanthomorpha Ctenosquamata Eurypterygii Neoteleostei Neognathi Euteleostei Clupeocephala Elopocephala Teleostei Neopterygii Actinopteri Actinopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGAGGTAGTAGATTGAATAGT miRNA* TATACAATCTACTGTCTTTCC mismatches: 2 bulges: 0 |
pre-miRNA
CAACATGGATGCTGTCCTTGGGGCTGAGGTAGTAGATTGAATAGTTGTGGGGTTGTGTAACCTCTTTTTGAGATAACTATACAATCTACTGTCTTTCCCA
AGGAGACAGCCAGGTCA
dot-bracket secondary structure
.......((((((((((((((((..((((((((((((((.((((((((((((((....))))))........)))))))).)))))))))))))))))))
))))..))))...))).
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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CAACATGGATGCTGTCCTTGGGGCTGAGGTAGTAGATTGAATAGTTGTGGGGTTGTGTAACCTCTTTTTGAGATAACTATACAATCTACTGTCTTTCCCA
AGGAGACAGCCAGGTCA
dot-bracket secondary structure
.......((((((((((((((((..((((((((((((((.((((((((((((((....))))))........)))))))).)))))))))))))))))))
))))..))))...))).
SIMILARITIES| miRBase tni-let-7e: 9e-45 PMRD no hits microPC no hits | UniProt no hits RFAM let-7: 4e-38 | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
