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Species belonging to selected taxon:

Sebastes caurinus, Sebastes rastrelliger



ABOUT THIS RECORD

ID: MNEST009519
species: Sebastes caurinus
miRNA family: mir-1827
source: miRNEST

Taxonomy by NCBI:
Sebastes caurinus Sebastes Sebastinae Sebastidae Scorpaenoidei Scorpaeniformes Percomorpha Euacanthopterygii Acanthopterygii Holacanthopterygii Euacanthomorpha Acanthomorpha Ctenosquamata Eurypterygii Neoteleostei Neognathi Euteleostei Clupeocephala Elopocephala Teleostei Neopterygii Actinopteri Actinopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGAGGTAGTAGATTGAATAGT

miRNA*
TATACAATCTACTGTCTTTCC

mismatches: 2
bulges: 0

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pre-miRNA
CAACATGGATGCTGTCCTTGGGGCTGAGGTAGTAGATTGAATAGTTGTGGGGTTGTGTAACCTCTTTTTGAGATAACTATACAATCTACTGTCTTTCCCA
AGGAGACAGCCAGGTCA


dot-bracket secondary structure
.......((((((((((((((((..((((((((((((((.((((((((((((((....))))))........)))))))).)))))))))))))))))))
))))..))))...))).



SIMILARITIES
miRBase tni-let-7e: 9e-45

PMRD no hits

microPC no hits
UniProt no hits

RFAM let-7: 4e-38
most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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