miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Oryzias latipes, Gasterosteus aculeatus, Gadus morhua, Oreochromis niloticus, Fundulus heteroclitus, Sparus aurata, Dicentrarchus labrax, Dissostichus mawsoni, Anoplopoma fimbria, Esox lucius, Takifugu rubripes, Sebastes caurinus, Perca flavescens, Paralabidochromis chilotes, Hippoglossus hippoglossus, Poecilia reticulata, Paralichthys olivaceus, Psetta maxima, Lates calcarifer, Sebastes rastrelliger, Solea senegalensis, Thunnus thynnus, Cynoglossus semilaevis



ABOUT THIS RECORD

ID: MNEST009519
species: Sebastes caurinus
miRNA family: mir-1827
source: miRNEST

Taxonomy by NCBI:
Sebastes caurinus Sebastes Sebastinae Sebastidae Scorpaenoidei Scorpaeniformes Percomorpha Euacanthopterygii Acanthopterygii Holacanthopterygii Euacanthomorpha Acanthomorpha Ctenosquamata Eurypterygii Neoteleostei Neognathi Euteleostei Clupeocephala Elopocephala Teleostei Neopterygii Actinopteri Actinopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGAGGTAGTAGATTGAATAGT

miRNA*
TATACAATCTACTGTCTTTCC

mismatches: 2
bulges: 0

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pre-miRNA
CAACATGGATGCTGTCCTTGGGGCTGAGGTAGTAGATTGAATAGTTGTGGGGTTGTGTAACCTCTTTTTGAGATAACTATACAATCTACTGTCTTTCCCA
AGGAGACAGCCAGGTCA


dot-bracket secondary structure
.......((((((((((((((((..((((((((((((((.((((((((((((((....))))))........)))))))).)))))))))))))))))))
))))..))))...))).



SIMILARITIES
miRBase tni-let-7e: 9e-45

PMRD no hits

microPC no hits
UniProt no hits

RFAM let-7: 4e-38
most similar mature miRNAs

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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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