ABOUT THIS RECORDspecies: Helianthus tuberosus
miRNA family: MIRf319
source: miRNEST
Taxonomy by NCBI:
Helianthus tuberosus Helianthus Heliantheae Heliantheae alliance Asteroideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GATGAGCTCTTGAAAAGAAAC miRNA* TTATTTTCTTGCTTCTCCA mismatches: 4 bulges: 2 |
pre-miRNA
CAGTCTACTGCACCGGAGGAAGATGAGCTCTTGAAAAGAAACACCGATTGCGTTTATTTTCTTGCTTCTCCATTAACCTGCAAAAAGGGA
dot-bracket secondary structure
...(((.(((...))).))).((.((((....(((((.((((.........)))).)))))..)))).))......(((......)))..
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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CAGTCTACTGCACCGGAGGAAGATGAGCTCTTGAAAAGAAACACCGATTGCGTTTATTTTCTTGCTTCTCCATTAACCTGCAAAAAGGGA
dot-bracket secondary structure
...(((.(((...))).))).((.((((....(((((.((((.........)))).)))))..)))).))......(((......)))..
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt sp|Q0J952|C3H32_ORYSJ: 0.000003 RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
