ABOUT THIS RECORDspecies: Limnanthes alba
miRNA family: MIR408
source: miRNEST
Taxonomy by NCBI:
Limnanthes alba Limnanthes Limnanthaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGCACTGCCTCTTCCCTGGCT miRNA* GCAGGGAACAGACAGAGCATG mismatches: 4 bulges: 0 |
pre-miRNA
AGTATAGACAGAGGCAGGGAACAGACAGAGCATGAATGGAACTACTAACACGTTTACCTGTTTCTGCTCTACCCATGCACTGCCTCTTCCCTGGCTCTCT
CACTCT
dot-bracket secondary structure
......((.((((.(((((((.((.(((.(((((..((((......((((........)))).....))))..))))).))).)).))))))).)))).)
).....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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AGTATAGACAGAGGCAGGGAACAGACAGAGCATGAATGGAACTACTAACACGTTTACCTGTTTCTGCTCTACCCATGCACTGCCTCTTCCCTGGCTCTCT
CACTCT
dot-bracket secondary structure
......((.((((.(((((((.((.(((.(((((..((((......((((........)))).....))))..))))).))).)).))))))).)))).)
).....
SIMILARITIES| miRBase ptc-MIR408: 4e-16 PMRD ptc-miR408: 4e-16 microPC miR408: 4e-16 | UniProt no hits RFAM MIR408: 0.000000000000006 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
