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Species belonging to selected taxon:

Brassica napus, Brassica oleracea var. alboglabra, Brassica rapa, Limnanthes alba, Raphanus raphanistrum, Raphanus raphanistrum subsp. landra, Raphanus raphanistrum subsp. maritimus, Raphanus sativus, Raphanus sativus var. oleiformis, Thellungiella halophila, Tropaeolum majus, Carica papaya, Arabidopsis thaliana, Brassica oleracea



ABOUT THIS RECORD

ID: MNEST001399
species: Limnanthes alba
miRNA family: MIR408
source: miRNEST

Taxonomy by NCBI:
Limnanthes alba Limnanthes Limnanthaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGCACTGCCTCTTCCCTGGCT

miRNA*
 GCAGGGAACAGACAGAGCATG

mismatches: 4
bulges: 0
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pre-miRNA
 AGTATAGACAGAGGCAGGGAACAGACAGAGCATGAATGGAACTACTAACACGTTTACCTGTTTCTGCTCTACCCATGCACTGCCTCTTCCCTGGCTCTCT
CACTCT

dot-bracket secondary structure
......((.((((.(((((((.((.(((.(((((..((((......((((........)))).....))))..))))).))).)).))))))).)))).)
).....


SIMILARITIES
miRBase ptc-MIR408: 4e-16

PMRD ptc-miR408: 4e-16

microPC miR408: 4e-16		UniProt no hits

RFAM MIR408: 0.000000000000006		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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