ABOUT THIS RECORDspecies: Linum usitatissimum
miRNA family: MIR162
source: miRNEST
Taxonomy by NCBI:
Linum usitatissimum Linum Linaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCGATAAACCTCTGCATCCA miRNA* GAGGCAGCGGTTCATCGATC mismatches: 3 bulges: 0 |
pre-miRNA
CGTTGTGAAGAGGGAGGGAACACACGGAGTTTGGAGGCAGCGGTTCATCGATCTCTTCATGGTTTATGTGGGTTCATCCGATCACAAAAACACGTGAATCG
ATCGATAAACCTCTGCATCCAGCAACCCCCCTAGTTTCTCCCTTCCTACC
dot-bracket secondary structure
)...(((..((((((((((......((.(((((((.((((.((((.(((((((..((((((((((.(((((..((....))))))).)))).))))))..)
)))))).)))).)))).))))..)))))......))))))))))..))).
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
CGTTGTGAAGAGGGAGGGAACACACGGAGTTTGGAGGCAGCGGTTCATCGATCTCTTCATGGTTTATGTGGGTTCATCCGATCACAAAAACACGTGAATCG
ATCGATAAACCTCTGCATCCAGCAACCCCCCTAGTTTCTCCCTTCCTACC
dot-bracket secondary structure
)...(((..((((((((((......((.(((((((.((((.((((.(((((((..((((((((((.(((((..((....))))))).)))).))))))..)
)))))).)))).)))).))))..)))))......))))))))))..))).
SIMILARITIES| miRBase csi-MIR162: 5.0E-10 PMRD rco-miR162: 5.0E-10 microPC miR162: 3.0E-11 | UniProt no hits RFAM 2MIR162_2: 9.0E-9 | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
