ABOUT THIS RECORDspecies: Linum usitatissimum
miRNA family: MIR162
source: miRNEST
Taxonomy by NCBI:
Linum usitatissimum Linum Linaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCGATAAACCTCTGCATCCA miRNA* GAGGCAGCGGTTCATCGATC mismatches: 3 bulges: 0 |
pre-miRNA
GTTGTGAAGAGGGAGGGAACACACGGAGTTTGGAGGCAGCGGTTCATCGATCTCTTCATGGTTTATGTGGGTTCATCCGATCACAAAAACACGTGAATCG
ATCGATAAACCTCTGCATCCAGCAACCCCCCTAGTTTCTCCCTTCCTACC
dot-bracket secondary structure
...(((..((((((((((......((.(((((((.((((.((((.(((((((..((((((((((.(((((..((....))))))).)))).))))))..)
)))))).)))).)))).))))..)))))......))))))))))..))).
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
GTTGTGAAGAGGGAGGGAACACACGGAGTTTGGAGGCAGCGGTTCATCGATCTCTTCATGGTTTATGTGGGTTCATCCGATCACAAAAACACGTGAATCG
ATCGATAAACCTCTGCATCCAGCAACCCCCCTAGTTTCTCCCTTCCTACC
dot-bracket secondary structure
...(((..((((((((((......((.(((((((.((((.((((.(((((((..((((((((((.(((((..((....))))))).)))).))))))..)
)))))).)))).)))).))))..)))))......))))))))))..))).
SIMILARITIES| miRBase csi-MIR162: 0.0000000005 PMRD rco-miR162: 0.0000000005 microPC miR162: 0.00000000003 | UniProt no hits RFAM MIR162_2: 0.000000009 | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
