ABOUT THIS RECORDspecies: Raphanus raphanistrum
source: miRNEST
Taxonomy by NCBI:
Raphanus raphanistrum Raphanus Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ACAATGGATTGGACAATGGCT miRNA* CCATTCTTATGGATTTATTTGTA mismatches: 4 bulges: 2 |
pre-miRNA
AAACACATCAGAGCCATTCTTATGGATTTATTTGTAGCAGGCATAGACACATCTGCAATAACAATGGATTGGACAATGGCTGAGATTGCAA
dot-bracket secondary structure
......(((..(((((((.((...(((((((((((.(((((..........))))).)))..)))))))).)).)))))))..))).....
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
AAACACATCAGAGCCATTCTTATGGATTTATTTGTAGCAGGCATAGACACATCTGCAATAACAATGGATTGGACAATGGCTGAGATTGCAA
dot-bracket secondary structure
......(((..(((((((.((...(((((((((((.(((((..........))))).)))..)))))))).)).)))))))..))).....
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt sp|O65787|C71B6_ARATH: 0.0000002 RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
