ABOUT THIS RECORDspecies: Tropaeolum majus
miRNA family: MIRf37
source: miRNEST
Taxonomy by NCBI:
Tropaeolum majus Tropaeolum Tropaeolaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GTGCGGTTCGGTTCGGTTCGG miRNA* GGATTTAAAGAAACGAATAT mismatches: 5 bulges: 1 |
pre-miRNA
ATCGGTTTAATGGATTTAAAGAAACGAATATGTATGTGTGCGGTTCGGTTCGGTTCGGTATCGATC
dot-bracket secondary structure
((((((....((((((.((.(((.((.((((....)))).)).)))..)).))))))..)))))).
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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ATCGGTTTAATGGATTTAAAGAAACGAATATGTATGTGTGCGGTTCGGTTCGGTTCGGTATCGATC
dot-bracket secondary structure
((((((....((((((.((.(((.((.((((....)))).)).)))..)).))))))..)))))).
SIMILARITIES| miRBase no hits PMRD ptc-miRf12527-akr: 0.0007 microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
