miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Brassica napus, Brassica oleracea var. alboglabra, Brassica rapa, Limnanthes alba, Raphanus raphanistrum, Raphanus raphanistrum subsp. landra, Raphanus raphanistrum subsp. maritimus, Raphanus sativus, Raphanus sativus var. oleiformis, Thellungiella halophila, Tropaeolum majus, Carica papaya, Arabidopsis thaliana, Brassica oleracea



ABOUT THIS RECORD

ID: MNEST002813
species: Tropaeolum majus
miRNA family: MIRf37
source: miRNEST

Taxonomy by NCBI:
Tropaeolum majus Tropaeolum Tropaeolaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
GTGCGGTTCGGTTCGGTTCGG

miRNA*
GGATTTAAAGAAACGAATAT

mismatches: 5
bulges: 1

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pre-miRNA
ATCGGTTTAATGGATTTAAAGAAACGAATATGTATGTGTGCGGTTCGGTTCGGTTCGGTATCGATC

dot-bracket secondary structure
((((((....((((((.((.(((.((.((((....)))).)).)))..)).))))))..)))))).


SIMILARITIES
miRBase no hits

PMRD ptc-miRf12527-akr: 0.0007

microPC no hits
UniProt no hits

RFAM no hits
most similar mature miRNAs

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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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