miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Tropaeolum majus



ABOUT THIS RECORD

ID: MNEST002813
species: Tropaeolum majus
miRNA family: MIRf37
source: miRNEST

Taxonomy by NCBI:
Tropaeolum majus Tropaeolum Tropaeolaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
GTGCGGTTCGGTTCGGTTCGG

miRNA*
GGATTTAAAGAAACGAATAT

mismatches: 5
bulges: 1

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pre-miRNA
ATCGGTTTAATGGATTTAAAGAAACGAATATGTATGTGTGCGGTTCGGTTCGGTTCGGTATCGATC

dot-bracket secondary structure
((((((....((((((.((.(((.((.((((....)))).)).)))..)).))))))..)))))).


SIMILARITIES
miRBase no hits

PMRD ptc-miRf12527-akr: 0.0007

microPC no hits
UniProt no hits

RFAM no hits
most similar mature miRNAs

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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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