ABOUT THIS RECORDspecies: Zingiber officinale
miRNA family: MIR444
source: miRNEST
Taxonomy by NCBI:
Zingiber officinale Zingiber Zingiberaceae Zingiberales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGCAATTGTTGCCTCAAGCTC miRNA* GTATAAGGCAGCAATTGCATA mismatches: 5 bulges: 0 |
pre-miRNA
GAGATTTCAGTTAATGCAAAAGAAGGCAGCACGTATAAGGCAGCAATTGCATAACTTGTTATGTGCGCTGCCTTAGTTTCTTGCAATTGTTGCCTCAAGC
TCGTTGCCTCCCTTTGCTAAAACTGTGAGTA
dot-bracket secondary structure
....((.(((((...(((((...(((((((..((...((((((((((((((.((((.((..........))...))))...))))))))))))))...))
..)))))))...)))))...))))).))...
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GAGATTTCAGTTAATGCAAAAGAAGGCAGCACGTATAAGGCAGCAATTGCATAACTTGTTATGTGCGCTGCCTTAGTTTCTTGCAATTGTTGCCTCAAGC
TCGTTGCCTCCCTTTGCTAAAACTGTGAGTA
dot-bracket secondary structure
....((.(((((...(((((...(((((((..((...((((((((((((((.((((.((..........))...))))...))))))))))))))...))
..)))))))...)))))...))))).))...
SIMILARITIES| miRBase tae-MIR444: 0.0004 PMRD zma-miR444a: 0.0004 microPC miR444: 2e-33 | UniProt no hits RFAM MIR444: 0.00003 | most similar mature miRNAs |
Identical with: miR444 from microPC (MNEST045275) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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