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Species belonging to selected taxon:

Curcuma longa, Zingiber officinale



ABOUT THIS RECORD

ID: MNEST002843
species: Zingiber officinale
miRNA family: MIR444
source: miRNEST

Taxonomy by NCBI:
Zingiber officinale Zingiber Zingiberaceae Zingiberales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGCAATTGTTGCCTCAAGCTC

miRNA*
 GTATAAGGCAGCAATTGCATA

mismatches: 5
bulges: 0
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pre-miRNA
 AGAGATTTCAGTTAATGCAAAAGAAGGCAGCACGTATAAGGCAGCAATTGCATAACTTGTTATGTGCGCTGCCTTAGTTTCTTGCAATTGTTGCCTCAAGC
TCGTTGCCTCCCTTTGCTAAAACTGTGAGTA

dot-bracket secondary structure
)....((.(((((...(((((...(((((((..((...((((((((((((((.((((.((..........))...))))...))))))))))))))...))
..)))))))...)))))...))))).))...


SIMILARITIES
miRBase tae-MIR444: 0.0004

PMRD zma-miR444a: 0.0004

microPC miR444: 2.0E-33		UniProt no hits

RFAM 4MIR444: 3.0E-5		most similar mature miRNAs

Identical with: miR444 from microPC (MNEST045275)

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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