ABOUT THIS RECORDspecies: Capsicum annuum
miRNA family: MIR396
source: miRNEST
Taxonomy by NCBI:
Capsicum annuum Capsicum Capsiceae Solanoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTCCACAGCTTTCTTGAACTG miRNA* GTTCAATAAAGCTGTGGGAAG mismatches: 2 bulges: 0 |
pre-miRNA
TTGTGTACAAAATGACTCTTTTTGTACTTTTCCACAGCTTTCTTGAACTGCATAAATCAAAATTTTAATTCTTTTTTTTTTTTGGTTAAGATGAAGAGAA
TTAATTAAAATTTTTGGGGTTCAATAAAGCTGTGGGAAGATACATATAGAGTCAACAGCATATAT
dot-bracket secondary structure
.(((((......(((((((...((((.((((((((((((((.(((((((.((.((((.......((((((((((((.((((......)))).))))))))
)))).....)))).)).))))))).)))))))))))))).))))...)))))))...)))))...
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TTGTGTACAAAATGACTCTTTTTGTACTTTTCCACAGCTTTCTTGAACTGCATAAATCAAAATTTTAATTCTTTTTTTTTTTTGGTTAAGATGAAGAGAA
TTAATTAAAATTTTTGGGGTTCAATAAAGCTGTGGGAAGATACATATAGAGTCAACAGCATATAT
dot-bracket secondary structure
.(((((......(((((((...((((.((((((((((((((.(((((((.((.((((.......((((((((((((.((((......)))).))))))))
)))).....)))).)).))))))).)))))))))))))).))))...)))))))...)))))...
SIMILARITIES| miRBase gma-MIR396a: 0.000000000009 PMRD gma-miR396a: 0.000000000009 microPC miR396: 0.000002 | UniProt no hits RFAM MIR396: 0.00000004 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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