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Species belonging to selected taxon:

Nicotiana benthamiana, Nicotiana langsdorffii x Nicotiana sanderae, Nicotiana tabacum, Petunia axillaris subsp. axillaris, Solanum habrochaites, Solanum lycopersicum, Solanum melongena, Solanum pennellii, Solanum torvum, Capsicum annuum, Solanum tuberosum



ABOUT THIS RECORD

ID: MNEST002886
species: Capsicum annuum
miRNA family: MIR396
source: miRNEST

Taxonomy by NCBI:
Capsicum annuum Capsicum Capsiceae Solanoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TTCCACAGCTTTCTTGAACTG

miRNA*
 GTTCAATAAAGCTGTGGGAAG

mismatches: 2
bulges: 0
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pre-miRNA
 TTGTGTACAAAATGACTCTTTTTGTACTTTTCCACAGCTTTCTTGAACTGCATAAATCAAAATTTTAATTCTTTTTTTTTTTTGGTTAAGATGAAGAGAA
TTAATTAAAATTTTTGGGGTTCAATAAAGCTGTGGGAAGATACATATAGAGTCAACAGCATATAT

dot-bracket secondary structure
.(((((......(((((((...((((.((((((((((((((.(((((((.((.((((.......((((((((((((.((((......)))).))))))))
)))).....)))).)).))))))).)))))))))))))).))))...)))))))...)))))...


SIMILARITIES
miRBase gma-MIR396a: 0.000000000009

PMRD gma-miR396a: 0.000000000009

microPC miR396: 0.000002		UniProt no hits

RFAM MIR396: 0.00000004		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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