ABOUT THIS RECORDspecies: Mus musculus
miRNA family: mir-1227
source: miRNEST
Taxonomy by NCBI:
Mus musculus Mus Mus Murinae Muridae Muroidea Sciurognathi Rodentia Glires Euarchontoglires Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GATGGGCCAGGCGGTGGTGGC miRNA* CAAGCCAGCCTGGTCTACAGA mismatches: 4 bulges: 2 |
pre-miRNA
TAAGGAAGCAAGATGGGCCAGGCGGTGGTGGCGCACGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGACGGATTTCTGAGTTCCAAGCCAGCCTGGT
CTACAGAGTGAGTTC
dot-bracket secondary structure
...(((..((...(((((((((((((..(((.((..((((((..(((((.....)))))...))))))...(((....))).)).))).))).)))))))
))).....))..)))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TAAGGAAGCAAGATGGGCCAGGCGGTGGTGGCGCACGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGACGGATTTCTGAGTTCCAAGCCAGCCTGGT
CTACAGAGTGAGTTC
dot-bracket secondary structure
...(((..((...(((((((((((((..(((.((..((((((..(((((.....)))))...))))))...(((....))).)).))).))).)))))))
))).....))..)))
SIMILARITIES| miRBase mmu-mir-3470b: 7e-21 PMRD ptc-miRf12412-akr: 0.00009 microPC no hits | UniProt no hits RFAM Metazoa_SRP: 0.000000002 | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
