ABOUT THIS RECORDspecies: Triticum aestivum
miRNA family: MIR1171
source: miRNEST
Taxonomy by NCBI:
Triticum aestivum Triticum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGGAGTGGAGTGGAGTGGAGT miRNA* TANGCGACCATCTGCTCCAGG mismatches: 3 bulges: 2 |
pre-miRNA
TCCTTATATACTGGAGTGGAGTGGAGTGGAGTAGTATTTCTTAATTTCTTCTTCAGCTACAAAAACTGTAACGAAAATGTGAATTANTTAACTANGCGAC
CATCTGCTCCAGGTCCGACCA
dot-bracket secondary structure
..........((((((((((.(((.((..((((.((.(((.((.((((.....(((.........)))....)))).)).))).))..).)))..))..)
)))))))))))).........
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
Source sequences
degradome data
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TCCTTATATACTGGAGTGGAGTGGAGTGGAGTAGTATTTCTTAATTTCTTCTTCAGCTACAAAAACTGTAACGAAAATGTGAATTANTTAACTANGCGAC
CATCTGCTCCAGGTCCGACCA
dot-bracket secondary structure
..........((((((((((.(((.((..((((.((.(((.((.((((.....(((.........)))....)))).)).))).))..).)))..))..)
)))))))))))).........
SIMILARITIES| miRBase cre-MIR1171: 0.00009 PMRD cre-miR1171: 0.00009 microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
Source sequences
degradome data
download this record
