ABOUT THIS RECORDspecies: Solanum tuberosum
miRNA family: MIR403
source: miRNEST
Taxonomy by NCBI:
Solanum tuberosum Solanum Solaneae Solanoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CTAGATTCACGCACAAACTCG miRNA* CGTTTGTGCGTGAATCTAACA mismatches: 4 bulges: 0 |
pre-miRNA
AGAAATGGAAAATCAGGAAGAGGCATATTTCACGTTTGTGCGTGAATCTAACAACCCTTTTCATCAGAAAAACTGTTGTTGTTTGCTAGATTCACGCACA
AACTCGTAATATGTATTTTTCGAATATCTGCGCTT
dot-bracket secondary structure
......(((......((((((.(((((((....((((((((((((((((((((((..(((((....)))))...))))).......))))))))))))))
)))....))))))).)))))).....)))......
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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AGAAATGGAAAATCAGGAAGAGGCATATTTCACGTTTGTGCGTGAATCTAACAACCCTTTTCATCAGAAAAACTGTTGTTGTTTGCTAGATTCACGCACA
AACTCGTAATATGTATTTTTCGAATATCTGCGCTT
dot-bracket secondary structure
......(((......((((((.(((((((....((((((((((((((((((((((..(((((....)))))...))))).......))))))))))))))
)))....))))))).)))))).....)))......
SIMILARITIES| miRBase tcc-MIR403a: 0.0000004 PMRD stu-miR403: 2e-55 microPC miR403: 1e-35 | UniProt no hits RFAM MIR403: 0.0000005 | most similar mature miRNAs |
Identical with: stu-miR403 from PMRD (MNEST054669) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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