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ABOUT THIS RECORD
ID:
MNEST009519
species:
Sebastes caurinus
miRNA family:
mir-1827
source:
miRNEST
Taxonomy by NCBI:
Sebastes caurinus
Sebastes
Sebastinae
Sebastidae
Scorpaenoidei
Scorpaeniformes
Percomorpha
Euacanthopterygii
Acanthopterygii
Holacanthopterygii
Euacanthomorpha
Acanthomorpha
Ctenosquamata
Eurypterygii
Neoteleostei
Neognathi
Euteleostei
Clupeocephala
Elopocephala
Teleostei
Neopterygii
Actinopteri
Actinopterygii
Euteleostomi
Teleostomi
Gnathostomata
Vertebrata
Craniata
Chordata
Deuterostomia
Coelomata
Bilateria
Eumetazoa
Metazoa
Fungi/Metazoa group
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TGAGGTAGTAGATTGAATAGT
miRNA*
TATACAATCTACTGTCTTTCC
mismatches:
2
bulges:
0
View larger
pre-miRNA
CAACATGGATGCTGTCCTTGGGGC
TGAGGTAGTAGATTGAATAGT
TGTGGGGTTGTGTAACCTCTTTTTGAGATAAC
TATACAATCTACTGTCTTTCC
CA
AGGAGACAGCCAGGTCA
dot-bracket secondary structure
.......((((((((((((((((.
.((((((((((((((.(((((
(((((((((....))))))........)))))
))).)))))))))))))))))
))
))))..))))...))).
SIMILARITIES
miRBase
tni-let-7e
:
9e-45
PMRD
no hits
microPC
no hits
UniProt
no hits
RFAM
let-7: 4e-38
most similar mature miRNAs
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction:
true miRNA
Source sequences
download this record