ABOUT THIS RECORDspecies: Caligus clemensi
miRNA family: mir-993
source: miRNEST
Taxonomy by NCBI:
Caligus clemensi Caligus Caligidae Siphonostomatoida Podoplea Neocopepoda Copepoda Maxillopoda Crustacea Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GAAGCTCGACTCTACAGGTAT miRNA* ACCCTGTTGATCCGGGCTTTTG mismatches: 4 bulges: 1 |
pre-miRNA
TAGAAACCCCATACGTATTCTACCCTGTTGATCCGGGCTTTTGTAGAATTTTAAACCTATCGACATTCGTTGGAAAACAATTTCGATTGTTTCAGAAGCT
CGACTCTACAGGTATCGTACTGTATGGTTAGAA
dot-bracket secondary structure
........((((((((((..((((.(((.((..((((((((((.........((((..(((((.(((.(((....)))))).))))).))))))))))))
))..)).)))))))..)))).))))))......
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
TAGAAACCCCATACGTATTCTACCCTGTTGATCCGGGCTTTTGTAGAATTTTAAACCTATCGACATTCGTTGGAAAACAATTTCGATTGTTTCAGAAGCT
CGACTCTACAGGTATCGTACTGTATGGTTAGAA
dot-bracket secondary structure
........((((((((((..((((.(((.((..((((((((((.........((((..(((((.(((.(((....)))))).))))).))))))))))))
))..)).)))))))..)))).))))))......
SIMILARITIES| miRBase tca-mir-993: 0.0000000004 PMRD no hits microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
