miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Lepeophtheirus salmonis, Caligus rogercresseyi, Lernaeocera branchialis, Caligus clemensi, Calanus finmarchicus



ABOUT THIS RECORD

ID: MNEST009767
species: Caligus clemensi
miRNA family: mir-993
source: miRNEST

Taxonomy by NCBI:
Caligus clemensi Caligus Caligidae Siphonostomatoida Podoplea Neocopepoda Copepoda Maxillopoda Crustacea Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
GAAGCTCGACTCTACAGGTAT

miRNA*
ACCCTGTTGATCCGGGCTTTTG

mismatches: 4
bulges: 1

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pre-miRNA
TAGAAACCCCATACGTATTCTACCCTGTTGATCCGGGCTTTTGTAGAATTTTAAACCTATCGACATTCGTTGGAAAACAATTTCGATTGTTTCAGAAGCT
CGACTCTACAGGTAT
CGTACTGTATGGTTAGAA


dot-bracket secondary structure
........((((((((((..((((.(((.((..((((((((((.........((((..(((((.(((.(((....)))))).))))).))))))))))))
))..)).))))))).
.)))).))))))......



SIMILARITIES
miRBase tca-mir-993: 0.0000000004

PMRD no hits

microPC no hits
UniProt no hits

RFAM no hits
most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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