ABOUT THIS RECORDspecies: Theobroma cacao
miRNA family: MIR162
source: miRBase, original name: tcc-MIR162 (MI0017463)
Taxonomy by NCBI:
Theobroma cacao Theobroma Byttnerioideae Malvaceae Malvales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCGATAAACCTCTGCATCCAG miRNA* GGAGGCAGCGGTTCATCGATC mismatches: 3 bulges: 0 |
pre-miRNA
AGGAAAAAGGGTTAAAGACACTGGAGGCAGCGGTTCATCGATCTCTTCCTGGGAATTTTGTTGTGAGAATAACACAAATACATGATTCGATCGATAAACC
TCTGCATCCAGAGCCTTACCTCTCTCTTTAA
dot-bracket secondary structure
((((....((((..(((.(.(((((.((((.((((.(((((((...((.((...((((((((((....)))))).)))).)).))...))))))).))))
.)))).))))).).)))))))...))))...
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Argout X, Salse J, Aury JM, Guiltinan MJ, Droc G, Gouzy J, Allegre M, Chaparro C, Legavre T, Maximova SN, Abrouk M, Murat F, Fouet O, Poulain J, Ruiz M, Roguet Y, Rodier-Goud M, Barbosa-Neto JF, Sabot F, Kudrna D, Ammiraju JS, Schuster SC, Carlson JE, Sal, Nat Genet. 43:101-108(2011)., "The genome of Theobroma cacao"
AGGAAAAAGGGTTAAAGACACTGGAGGCAGCGGTTCATCGATCTCTTCCTGGGAATTTTGTTGTGAGAATAACACAAATACATGATTCGATCGATAAACC
TCTGCATCCAGAGCCTTACCTCTCTCTTTAA
dot-bracket secondary structure
((((....((((..(((.(.(((((.((((.((((.(((((((...((.((...((((((((((....)))))).)))).)).))...))))))).))))
.)))).))))).).)))))))...))))...
SIMILARITIES| miRBase ghr-MIR162a: 2e-49 PMRD ghr-miR162a: 2e-49 microPC miR162: 1e-41 | UniProt no hits RFAM MIR162_2: 4e-20 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Argout X, Salse J, Aury JM, Guiltinan MJ, Droc G, Gouzy J, Allegre M, Chaparro C, Legavre T, Maximova SN, Abrouk M, Murat F, Fouet O, Poulain J, Ruiz M, Roguet Y, Rodier-Goud M, Barbosa-Neto JF, Sabot F, Kudrna D, Ammiraju JS, Schuster SC, Carlson JE, Sal, Nat Genet. 43:101-108(2011)., "The genome of Theobroma cacao"
