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Species belonging to selected taxon:

Brassica napus, Brassica oleracea var. alboglabra, Brassica rapa, Citrus aurantium, Citrus reticulata, Citrus sinensis, Citrus unshiu, Eucalyptus globulus, Eucalyptus gunnii, Gossypium arboreum, Gossypium hirsutum, Gossypium raimondii, Limnanthes alba, Paullinia cupana var. sorbilis, Raphanus raphanistrum, Raphanus raphanistrum subsp. landra, Raphanus raphanistrum subsp. maritimus, Raphanus sativus, Raphanus sativus var. oleiformis, Thellungiella halophila, Theobroma cacao, Tropaeolum majus, Carica papaya, Citrus clementina, Arabidopsis thaliana, Brassica oleracea



ABOUT THIS RECORD

ID: MNEST041090
species: Theobroma cacao
miRNA family: MIR162
source: miRBase, original name: tcc-MIR162 (MI0017463)

Taxonomy by NCBI:
Theobroma cacao Theobroma Byttnerioideae Malvaceae Malvales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TCGATAAACCTCTGCATCCAG

miRNA*
 GGAGGCAGCGGTTCATCGATC

mismatches: 3
bulges: 0
View larger
pre-miRNA
 AGGAAAAAGGGTTAAAGACACTGGAGGCAGCGGTTCATCGATCTCTTCCTGGGAATTTTGTTGTGAGAATAACACAAATACATGATTCGATCGATAAACC
TCTGCATCCAGAGCCTTACCTCTCTCTTTAA

dot-bracket secondary structure
((((....((((..(((.(.(((((.((((.((((.(((((((...((.((...((((((((((....)))))).)))).)).))...))))))).))))
.)))).))))).).)))))))...))))...


SIMILARITIES
miRBase ghr-MIR162a: 2e-49

PMRD ghr-miR162a: 2e-49

microPC miR162: 1e-41		UniProt no hits

RFAM MIR162_2: 4e-20

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
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references
[1] Argout X, Salse J, Aury JM, Guiltinan MJ, Droc G, Gouzy J, Allegre M, Chaparro C, Legavre T, Maximova SN, Abrouk M, Murat F, Fouet O, Poulain J, Ruiz M, Roguet Y, Rodier-Goud M, Barbosa-Neto JF, Sabot F, Kudrna D, Ammiraju JS, Schuster SC, Carlson JE, Sal, Nat Genet. 43:101-108(2011)., "The genome of Theobroma cacao"



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