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Species belonging to selected taxon:
Theobroma cacao
ABOUT THIS RECORD
ID:
MNEST041090
species:
Theobroma cacao
miRNA family:
MIR162
source:
miRBase, original name:
tcc-MIR162
(
MI0017463
)
Taxonomy by NCBI:
Theobroma cacao
Theobroma
Byttnerioideae
Malvaceae
Malvales
malvids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TCGATAAACCTCTGCATCCAG
miRNA*
GGAGGCAGCGGTTCATCGATC
mismatches:
3
bulges:
0
View larger
pre-miRNA
AGGAAAAAGGGTTAAAGACACT
GGAGGCAGCGGTTCATCGATC
TCTTCCTGGGAATTTTGTTGTGAGAATAACACAAATACATGATTCGA
TCGATAAACC
TCTGCATCCAG
AGCCTTACCTCTCTCTTTAA
dot-bracket secondary structure
((((....((((..(((.(.((
(((.((((.((((.(((((((
...((.((...((((((((((....)))))).)))).)).))...))
))))).))))
.)))).)))))
.).)))))))...))))...
SIMILARITIES
miRBase
ghr-MIR162a
:
2e-49
PMRD
ghr-miR162a
:
2e-49
microPC
miR162
:
1e-41
UniProt
no hits
RFAM
MIR162_2: 4e-20
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction:
true miRNA
additional data
download this record
references
[
1
] Argout X, Salse J, Aury JM, Guiltinan MJ, Droc G, Gouzy J, Allegre M, Chaparro C, Legavre T, Maximova SN, Abrouk M, Murat F, Fouet O, Poulain J, Ruiz M, Roguet Y, Rodier-Goud M, Barbosa-Neto JF, Sabot F, Kudrna D, Ammiraju JS, Schuster SC, Carlson JE, Sal,
Nat Genet. 43:101-108(2011).
,
"The genome of Theobroma cacao"