ABOUT THIS RECORDspecies: Theobroma cacao
miRNA family: MIR164
source: miRBase, original name: tcc-MIR164a (MI0017464)
Taxonomy by NCBI:
Theobroma cacao Theobroma Byttnerioideae Malvaceae Malvales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGGAGAAGCAGGGCACGTGCA miRNA* CACGTGCTCCCCTTCTCCAAC mismatches: 2 bulges: 0 |
pre-miRNA
CCGGGTGAGTAGCTCCTTGTTGGAGAAGCAGGGCACGTGCAAAATTGCCAATCCATTTTGGCTTCTCAAATGCCATGTCTCGCGTTCTGCACGTGCTCCC
CTTCTCCAACACGGGTTCCTCGCCCTAT
dot-bracket secondary structure
..(((((((.(((.((.(((((((((((..(((((((((((.....(((((......)))))......(((((........))))).)))))))))))..
))))))))))).))))).)))))))...
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Argout X, Salse J, Aury JM, Guiltinan MJ, Droc G, Gouzy J, Allegre M, Chaparro C, Legavre T, Maximova SN, Abrouk M, Murat F, Fouet O, Poulain J, Ruiz M, Roguet Y, Rodier-Goud M, Barbosa-Neto JF, Sabot F, Kudrna D, Ammiraju JS, Schuster SC, Carlson JE, Sal, Nat Genet. 43:101-108(2011)., "The genome of Theobroma cacao"
CCGGGTGAGTAGCTCCTTGTTGGAGAAGCAGGGCACGTGCAAAATTGCCAATCCATTTTGGCTTCTCAAATGCCATGTCTCGCGTTCTGCACGTGCTCCC
CTTCTCCAACACGGGTTCCTCGCCCTAT
dot-bracket secondary structure
..(((((((.(((.((.(((((((((((..(((((((((((.....(((((......)))))......(((((........))))).)))))))))))..
))))))))))).))))).)))))))...
SIMILARITIES| miRBase tcc-MIR164b: 0.00000000003 PMRD gma-miR164: 0.00000000003 microPC miR164: 0.00002 | UniProt no hits RFAM MIR164: 0.0000000005 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Argout X, Salse J, Aury JM, Guiltinan MJ, Droc G, Gouzy J, Allegre M, Chaparro C, Legavre T, Maximova SN, Abrouk M, Murat F, Fouet O, Poulain J, Ruiz M, Roguet Y, Rodier-Goud M, Barbosa-Neto JF, Sabot F, Kudrna D, Ammiraju JS, Schuster SC, Carlson JE, Sal, Nat Genet. 43:101-108(2011)., "The genome of Theobroma cacao"
