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Species belonging to selected taxon:
Actinidia chinensis
,
Actinidia deliciosa
,
Actinidia eriantha
,
Antirrhinum majus
,
Aquilegia formosa x Aquilegia pubescens
,
Arachis duranensis
,
Arachis hypogaea
,
Arachis ipaensis
,
Barnadesia spinosa
,
Beta vulgaris
,
Brassica napus
,
Brassica oleracea var. alboglabra
,
Brassica rapa
,
Cichorium intybus
,
Citrus aurantium
,
Citrus reticulata
,
Citrus sinensis
,
Citrus unshiu
,
Coffea canephora
,
Cucumis melo subsp. melo
,
Eschscholzia californica
,
Eucalyptus globulus
,
Eucalyptus gunnii
,
Euonymus alatus
,
Euphorbia esula
,
Fagus sylvatica
,
Fragaria vesca
,
Fragaria x ananassa
,
Fraxinus excelsior
,
Gerbera hybrid cultivar
,
Glycine soja
,
Glycyrrhiza uralensis
,
Gossypium arboreum
,
Gossypium hirsutum
,
Gossypium raimondii
,
Guizotia abyssinica
,
Helianthus argophyllus
,
Helianthus ciliaris
,
Helianthus exilis
,
Helianthus paradoxus
,
Helianthus petiolaris
,
Helianthus tuberosus
,
Hevea brasiliensis
,
Humulus lupulus
,
Ipomoea batatas
,
Jatropha curcas
,
Juglans hindsii x Juglans regia
,
Lactuca perennis
,
Lactuca saligna
,
Lactuca sativa
,
Lactuca serriola
,
Lactuca virosa
,
Limnanthes alba
,
Linum usitatissimum
,
Lotus japonicus
,
Manihot esculenta
,
Medicago sativa
,
Mesembryanthemum crystallinum
,
Mimulus guttatus
,
Mimulus guttatus var. nasutus
,
Mimulus lewisii
,
Nicotiana benthamiana
,
Nicotiana langsdorffii x Nicotiana sanderae
,
Nicotiana tabacum
,
Ocimum basilicum
,
Panax ginseng
,
Papaver somniferum
,
Parthenium argentatum
,
Paullinia cupana var. sorbilis
,
Petunia axillaris subsp. axillaris
,
Phaseolus acutifolius
,
Phaseolus coccineus
,
Pisum sativum
,
Populus deltoides
,
Populus euphratica
,
Populus nigra
,
Populus tremula
,
Populus tremula x Populus alba
,
Populus tremula x Populus tremuloides
,
Populus tremuloides
,
Populus trichocarpa x Populus nigra
,
Populus x canadensis
,
Prunus armeniaca
,
Prunus persica
,
Quercus petraea
,
Quercus robur
,
Raphanus raphanistrum
,
Raphanus raphanistrum subsp. landra
,
Raphanus raphanistrum subsp. maritimus
,
Raphanus sativus
,
Raphanus sativus var. oleiformis
,
Salvia miltiorrhiza
,
Solanum habrochaites
,
Solanum lycopersicum
,
Solanum melongena
,
Solanum pennellii
,
Solanum torvum
,
Striga hermonthica
,
Tamarix hispida
,
Taraxacum kok-saghyz
,
Taraxacum officinale
,
Thellungiella halophila
,
Theobroma cacao
,
Trifolium pratense
,
Triphysaria pusilla
,
Triphysaria versicolor
,
Tropaeolum majus
,
Vitis shuttleworthii
,
Zinnia violacea
,
Bruguiera gymnorhiza
,
Cajanus cajan
,
Carica papaya
,
Capsicum annuum
,
Carthamus tinctorius
,
Catharanthus roseus
,
Centaurea maculosa
,
Centaurea solstitialis
,
Cicer arietinum
,
Cichorium endivia
,
Artemisia annua
,
Citrus clementina
,
Helianthus annuus
,
Glycine max
,
Arabidopsis thaliana
,
Solanum tuberosum
,
Vigna unguiculata
,
Vitis vinifera
,
Medicago truncatula
,
Brassica oleracea
,
Populus trichocarpa
,
Phaseolus vulgaris
,
Ricinus communis
,
Ipomoea nil
,
Populus trichocarpa x Populus deltoides
ABOUT THIS RECORD
ID:
MNEST041091
species:
Theobroma cacao
miRNA family:
MIR164
source:
miRBase, original name:
tcc-MIR164a
(
MI0017464
)
Taxonomy by NCBI:
Theobroma cacao
Theobroma
Byttnerioideae
Malvaceae
Malvales
malvids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TGGAGAAGCAGGGCACGTGCA
miRNA*
CACGTGCTCCCCTTCTCCAAC
mismatches:
2
bulges:
0
View larger
pre-miRNA
CCGGGTGAGTAGCTCCTTGT
TGGAGAAGCAGGGCACGTGCA
AAATTGCCAATCCATTTTGGCTTCTCAAATGCCATGTCTCGCGTTCTG
CACGTGCTCCC
CTTCTCCAAC
ACGGGTTCCTCGCCCTAT
dot-bracket secondary structure
..(((((((.(((.((.(((
((((((((..(((((((((((
.....(((((......)))))......(((((........))))).))
)))))))))..
))))))))))
).))))).)))))))...
SIMILARITIES
miRBase
tcc-MIR164b
:
0.00000000003
PMRD
gma-miR164
:
0.00000000003
microPC
miR164
:
0.00002
UniProt
no hits
RFAM
MIR164: 0.0000000005
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction:
true miRNA
additional data
download this record
references
[
1
] Argout X, Salse J, Aury JM, Guiltinan MJ, Droc G, Gouzy J, Allegre M, Chaparro C, Legavre T, Maximova SN, Abrouk M, Murat F, Fouet O, Poulain J, Ruiz M, Roguet Y, Rodier-Goud M, Barbosa-Neto JF, Sabot F, Kudrna D, Ammiraju JS, Schuster SC, Carlson JE, Sal,
Nat Genet. 43:101-108(2011).
,
"The genome of Theobroma cacao"