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Species belonging to selected taxon:

Brassica napus, Brassica oleracea var. alboglabra, Brassica rapa, Citrus aurantium, Citrus reticulata, Citrus sinensis, Citrus unshiu, Eucalyptus globulus, Eucalyptus gunnii, Gossypium arboreum, Gossypium hirsutum, Gossypium raimondii, Limnanthes alba, Paullinia cupana var. sorbilis, Raphanus raphanistrum, Raphanus raphanistrum subsp. landra, Raphanus raphanistrum subsp. maritimus, Raphanus sativus, Raphanus sativus var. oleiformis, Thellungiella halophila, Theobroma cacao, Tropaeolum majus, Carica papaya, Citrus clementina, Arabidopsis thaliana, Brassica oleracea



ABOUT THIS RECORD

ID: MNEST041091
species: Theobroma cacao
miRNA family: MIR164
source: miRBase, original name: tcc-MIR164a (MI0017464)

Taxonomy by NCBI:
Theobroma cacao Theobroma Byttnerioideae Malvaceae Malvales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGGAGAAGCAGGGCACGTGCA

miRNA*
 CACGTGCTCCCCTTCTCCAAC

mismatches: 2
bulges: 0
View larger
pre-miRNA
 CCGGGTGAGTAGCTCCTTGTTGGAGAAGCAGGGCACGTGCAAAATTGCCAATCCATTTTGGCTTCTCAAATGCCATGTCTCGCGTTCTGCACGTGCTCCC
CTTCTCCAACACGGGTTCCTCGCCCTAT

dot-bracket secondary structure
..(((((((.(((.((.(((((((((((..(((((((((((.....(((((......)))))......(((((........))))).)))))))))))..
))))))))))).))))).)))))))...


SIMILARITIES
miRBase tcc-MIR164b: 0.00000000003

PMRD gma-miR164: 0.00000000003

microPC miR164: 0.00002		UniProt no hits

RFAM MIR164: 0.0000000005

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
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references
[1] Argout X, Salse J, Aury JM, Guiltinan MJ, Droc G, Gouzy J, Allegre M, Chaparro C, Legavre T, Maximova SN, Abrouk M, Murat F, Fouet O, Poulain J, Ruiz M, Roguet Y, Rodier-Goud M, Barbosa-Neto JF, Sabot F, Kudrna D, Ammiraju JS, Schuster SC, Carlson JE, Sal, Nat Genet. 43:101-108(2011)., "The genome of Theobroma cacao"



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