ABOUT THIS RECORDspecies: Ipomoea nil
source: microPC, original name: miR394
Taxonomy by NCBI:
Ipomoea nil Ipomoea Ipomoeeae Convolvulaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTGGCATTCTGTCCACCTCC miRNA* AGGTGGGCATACTGCCAA mismatches: 4 bulges: 0 |
pre-miRNA
TTGGCATTCTGTCCACCTCCACTATTTTTTGACCCAAAAAAAAGAAGAAATCTATTATGGTAGAGGTGGGCATACTGCCAA
dot-bracket secondary structure
.(((((.(.((((((((((.(((((((((((...))))))..(((.....)))...))))).)))))))))).).))))).
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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TTGGCATTCTGTCCACCTCCACTATTTTTTGACCCAAAAAAAAGAAGAAATCTATTATGGTAGAGGTGGGCATACTGCCAA
dot-bracket secondary structure
.(((((.(.((((((((((.(((((((((((...))))))..(((.....)))...))))).)))))))))).).))))).
SIMILARITIES| miRBase gma-MIR394b: 0.000004 PMRD vvi-miR394c: 0.00006 microPC miR394: 0.000004 | UniProt no hits RFAM MIR394: 0.00007 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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