miRNEST 2.0, an integrative microRNA resource

miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Antirrhinum majus, Coffea canephora, Fraxinus excelsior, Ipomoea batatas, Mimulus guttatus, Mimulus guttatus var. nasutus, Mimulus lewisii, Nicotiana benthamiana, Nicotiana langsdorffii x Nicotiana sanderae, Nicotiana tabacum, Ocimum basilicum, Petunia axillaris subsp. axillaris, Salvia miltiorrhiza, Solanum habrochaites, Solanum lycopersicum, Solanum melongena, Solanum pennellii, Solanum torvum, Striga hermonthica, Triphysaria pusilla, Triphysaria versicolor, Capsicum annuum, Catharanthus roseus, Solanum tuberosum, Ipomoea nil

ABOUT THIS RECORD

ID: MNEST044836
species: Ipomoea nil
source: microPC, original name: miR394

Taxonomy by NCBI:
Ipomoea nil Ipomoea Ipomoeeae Convolvulaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms

SEQUENCE & STRUCTURE

miRNA
TTGGCATTCTGTCCACCTCC

miRNA*
AGGTGGGCATACTGCCAA

mismatches: 4
bulges: 0

View larger

pre-miRNA
TTGGCATTCTGTCCACCTCCACTATTTTTTGACCCAAAAAAAAGAAGAAATCTATTATGGTAGAGGTGGGCATACTGCCAA

dot-bracket secondary structure
.(((((.(.((((((((((.(((((((((((...))))))..(((.....)))...))))).)))))))))).).))))).

UniProt no hits

RFAM MIR394: 0.00007

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
download this record