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Species belonging to selected taxon:
Ipomoea batatas
,
Nicotiana benthamiana
,
Nicotiana langsdorffii x Nicotiana sanderae
,
Nicotiana tabacum
,
Petunia axillaris subsp. axillaris
,
Solanum habrochaites
,
Solanum lycopersicum
,
Solanum melongena
,
Solanum pennellii
,
Solanum torvum
,
Capsicum annuum
,
Solanum tuberosum
,
Ipomoea nil
ABOUT THIS RECORD
ID:
MNEST044836
species:
Ipomoea nil
source:
microPC, original name:
miR394
Taxonomy by NCBI:
Ipomoea nil
Ipomoea
Ipomoeeae
Convolvulaceae
Solanales
lamiids
asterids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TTGGCATTCTGTCCACCTCC
miRNA*
AGGTGGGCATACTGCCAA
mismatches:
4
bulges:
0
View larger
pre-miRNA
TTGGCATTCTGTCCACCTCC
ACTATTTTTTGACCCAAAAAAAAGAAGAAATCTATTATGGTAG
AGGTGGGCATACTGCCAA
dot-bracket secondary structure
.(((((.(.((((((((((.
(((((((((((...))))))..(((.....)))...))))).)
))))))))).).))))).
SIMILARITIES
miRBase
gma-MIR394b
:
0.000004
PMRD
vvi-miR394c
:
0.00006
microPC
miR394
:
0.000004
UniProt
no hits
RFAM
MIR394: 0.00007
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
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