ABOUT THIS RECORDspecies: Carica papaya
source: microPC, original name: miR390
Taxonomy by NCBI:
Carica papaya Carica Caricaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AGCTCAGGAGGGATAGCGCC miRNA* CGCTATCCATCCTGAGTT mismatches: 2 bulges: 0 |
pre-miRNA
AGCTCAGGAGGGATAGCGCCATGGCGGGTCTTGAATCTTGATCTTCATTTGCGCTATCCATCCTGAGTT
dot-bracket secondary structure
(((((((((.(((((((((.((((.(((((.........)))))))))..))))))))).)))))))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
download this record
AGCTCAGGAGGGATAGCGCCATGGCGGGTCTTGAATCTTGATCTTCATTTGCGCTATCCATCCTGAGTT
dot-bracket secondary structure
(((((((((.(((((((((.((((.(((((.........)))))))))..))))))))).)))))))))
SIMILARITIES| miRBase gma-MIR390a: 0.00000005 PMRD ath-miR390b: 0.0000002 microPC miR390: 1e-33 | UniProt no hits RFAM MIR390: 2e-32 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
download this record
