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Species belonging to selected taxon:

Brassica napus, Brassica oleracea var. alboglabra, Brassica rapa, Limnanthes alba, Raphanus raphanistrum, Raphanus raphanistrum subsp. landra, Raphanus raphanistrum subsp. maritimus, Raphanus sativus, Raphanus sativus var. oleiformis, Thellungiella halophila, Tropaeolum majus, Carica papaya, Arabidopsis thaliana, Brassica oleracea



ABOUT THIS RECORD

ID: MNEST045151
species: Carica papaya
source: microPC, original name: miR390

Taxonomy by NCBI:
Carica papaya Carica Caricaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 AGCTCAGGAGGGATAGCGCC

miRNA*
 CGCTATCCATCCTGAGTT

mismatches: 2
bulges: 0
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pre-miRNA
 AGCTCAGGAGGGATAGCGCCATGGCGGGTCTTGAATCTTGATCTTCATTTGCGCTATCCATCCTGAGTT

dot-bracket secondary structure
(((((((((.(((((((((.((((.(((((.........)))))))))..))))))))).)))))))))


SIMILARITIES
miRBase gma-MIR390a: 0.00000005

PMRD ath-miR390b: 0.0000002

microPC miR390: 1e-33		UniProt no hits

RFAM MIR390: 2e-32

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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