ABOUT THIS RECORDspecies: Brassica rapa
source: microPC, original name: miR160
Taxonomy by NCBI:
Brassica rapa Brassica Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGCCTGGCTCCCTGTATGCC miRNA* CGTATGAGGAGCCAAGCA mismatches: 4 bulges: 0 |
pre-miRNA
TGCCTGGCTCCCTGTATGCCATACACTAAGTTCATCGATCCTCGGCGACCTCCGTGGATGGCGTATGAGGAGCCAAGCA
dot-bracket secondary structure
.((.(((((((..(((((((((.(((..((.((..((.....))..)).))..))).)))))))))..))))))).)).
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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TGCCTGGCTCCCTGTATGCCATACACTAAGTTCATCGATCCTCGGCGACCTCCGTGGATGGCGTATGAGGAGCCAAGCA
dot-bracket secondary structure
.((.(((((((..(((((((((.(((..((.((..((.....))..)).))..))).)))))))))..))))))).)).
SIMILARITIES| miRBase bra-MIR160a: 0.000000000000001 PMRD bra-miR160a: 0.000000000000001 microPC miR160: 1e-39 | UniProt no hits RFAM mir-160: 0.000000000004 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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