miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Brassica napus, Brassica oleracea var. alboglabra, Brassica rapa, Raphanus raphanistrum, Raphanus raphanistrum subsp. landra, Raphanus raphanistrum subsp. maritimus, Raphanus sativus, Raphanus sativus var. oleiformis, Thellungiella halophila, Arabidopsis thaliana, Brassica oleracea



ABOUT THIS RECORD

ID: MNEST046625
species: Brassica rapa
source: microPC, original name: miR160

Taxonomy by NCBI:
Brassica rapa Brassica Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGCCTGGCTCCCTGTATGCC

miRNA*
 CGTATGAGGAGCCAAGCA

mismatches: 4
bulges: 0
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pre-miRNA
 TGCCTGGCTCCCTGTATGCCATACACTAAGTTCATCGATCCTCGGCGACCTCCGTGGATGGCGTATGAGGAGCCAAGCA

dot-bracket secondary structure
.((.(((((((..(((((((((.(((..((.((..((.....))..)).))..))).)))))))))..))))))).)).


SIMILARITIES
miRBase bra-MIR160a: 0.000000000000001

PMRD bra-miR160a: 0.000000000000001

microPC miR160: 1e-39		UniProt no hits

RFAM mir-160: 0.000000000004

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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